Mp5g08960



Description

Annotation

Database ID Description
SMART SM00185 arm_5
SUPERFAMILY SSF48371 ARM repeat
Pfam PF13646 HEAT repeats
Gene3D G3DSA:1.25.10.10 -
Gene3D G3DSA:3.40.50.300 -
SUPERFAMILY SSF48452 TPR-like
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain
ProSiteProfiles PS50176 Armadillo/plakoglobin ARM repeat profile.
Pfam PF00514 Armadillo/beta-catenin-like repeat
PANTHER PTHR47249 VACUOLAR PROTEIN 8
Pfam PF00931 NB-ARC domain
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
SMART SM00382 AAA_5
ProSiteProfiles PS50005 TPR repeat profile.
Coils Coil Coil
SMART SM00028 tpr_5
KOG KOG0166 Karyopherin (importin) alpha; N-term missing; [U]
KOG KOG0166 Karyopherin (importin) alpha; N-term missing; C-term missing; [U]
KOG KOG0553 TPR repeat-containing protein; C-term missing; [R]
KOG KOG4658 Apoptotic ATPase; C-term missing; [T]
KOG KOG0989 Replication factor C, subunit RFC4; C-term missing; [L]
MapolyID Mapoly0095s0062 -

Nomenclature

Gene symbol Product Transcript ID Status
MpNBS-LRR15 NBS genes Provisional

Expression Level powered by MBEX

Caution: MBEX data are analyzed based on the v6.1 genome.

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp5g08960.1 chr5:12082400..12089608 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.