Mp5g16950



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:2.60.120.650 Cupin
ProSiteProfiles PS51667 WRC domain profile.
SMART SM00558 cupin_9
Pfam PF02373 JmjC domain, hydroxylase
PANTHER PTHR12549 JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN
ProSiteProfiles PS51184 JmjC domain profile.
Pfam PF10497 Zinc-finger domain of monoamine-oxidase A repressor R1
Pfam PF08879 WRC
SUPERFAMILY SSF51197 Clavaminate synthase-like
ProSiteProfiles PS50007 Phosphatidylinositol-specific phospholipase X-box domain profile.
ProSiteProfiles PS50089 Zinc finger RING-type profile.
KEGG K15601 [histone H3]-dimethyl-L-lysine9 demethylase [EC:1.14.11.65]
KOG KOG1356 Putative transcription factor 5qNCA, contains JmjC domain; [K]
MapolyID Mapoly0117s0011 -
GO GO:0006357 regulation of transcription by RNA polymerase II
GO GO:0031490 chromatin DNA binding
GO GO:0000785 chromatin
GO GO:0000118 histone deacetylase complex
GO GO:0032454 histone H3K9 demethylase activity
GO GO:0003712 transcription coregulator activity
GO GO:0033169 obsolete histone H3-K9 demethylation

Nomenclature

Gene symbol Product Transcript ID Status
MpHDM6 Chromatin related protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp5g16950.1 chr5:20965808..20982495 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g16950.2 chr5:20965698..20982635 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.