Mp5g20530



Description

Annotation

Database ID Description
Coils Coil Coil
FunFam G3DSA:3.30.160.60:FF:000131 protein indeterminate-domain 5, chloroplastic-like
FunFam G3DSA:3.30.160.60:FF:000554 protein indeterminate-domain 12-like
Gene3D G3DSA:3.30.160.60 Classic Zinc Finger
KEGG K25870 zinc finger protein IDD3/4/5/6/7/8/9/10/11/12/13
KOG KOG1984 Vesicle coat complex COPII, subunit SFB3; C-term missing; [U]
KOG KOG2462 C2H2-type Zn-finger protein; N-term missing; [K]
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR10593 SERINE/THREONINE-PROTEIN KINASE RIO
Pfam PF00096 Zinc finger, C2H2 type
ProSitePatterns PS00028 Zinc finger C2H2 type domain signature.
ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile.
SMART SM00355 c2h2final6
SUPERFAMILY SSF57667 beta-beta-alpha zinc fingers
GO GO:0003700 DNA-binding transcription factor activity
GO GO:0005634 nucleus
MapolyID Mapoly0058s0031 -

Nomenclature

Gene symbol Product Transcript ID Status
MpIDDL3 transcription factor, IDD-related Published

Associated Literature (AI-based literature mining)

MpIDD family member that retains the conserved SHR-binding motif and was the strongest interactor of MpGRAS8/MpSHR in yeast two-hybrid assays, implicating it in a conserved SHR/IDD module.

1 core 0 peripheral

Zhou C, Yang T, Cai M, Cui H, Yu F, Liu H, Fu J. (2025) · BMC Genomics  research experimental subject
MpIDD family member that retains the conserved SHR-binding motif and was the strongest interactor of MpGRAS8/MpSHR in yeast two-hybrid assays, implicating it in a conserved SHR/IDD module.

Transcript models

Transcript ID Location Sequences Extract region
Mp5g20530.1 chr5:26007727..26013199 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp5g20530 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp5g20530 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.