Mp5g21000



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF00271 Helicase conserved C-terminal domain
SMART SM00487 ultradead3
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
Pfam PF17981 Cysteine Rich ADD domain
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger)
PANTHER PTHR45797 RAD54-LIKE
SUPERFAMILY SSF57903 FYVE/PHD zinc finger
SMART SM00490 helicmild6
Pfam PF00176 SNF2-related domain
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
Coils Coil Coil
CDD cd18007 DEXHc_ATRX-like
Gene3D G3DSA:3.40.50.300 -
ProSiteProfiles PS51533 ADD domain profile.
CDD cd11726 ADDz_ATRX
CDD cd18793 SF2_C_SNF
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
Gene3D G3DSA:3.40.50.10810 -
KEGG K10779 transcriptional regulator ATRX
KOG KOG1015 Transcription regulator XNP/ATRX, DEAD-box superfamily; [K]
MapolyID Mapoly0058s0081 -
GO GO:0016887 ATP hydrolysis activity
GO GO:0005634 nucleus
GO GO:0140658 ATP-dependent chromatin remodeler activity
GO GO:0005524 ATP binding

Nomenclature

Gene symbol Product Transcript ID Status
MpATRX Chromatin related protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp5g21000.1 chr5:26496157..26525614 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g21000.2 chr5:26496157..26525614 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g21000.3 chr5:26496157..26525594 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.