Mp5g24460



Description

Annotation

Database ID Description
SUPERFAMILY SSF54160 Chromo domain-like
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:3.40.50.10810 -
Pfam PF00628 PHD-finger
CDD cd18660 CD1_tandem
ProSiteProfiles PS50013 Chromo and chromo shadow domain profile.
CDD cd15532 PHD2_CHD_II
ProSiteProfiles PS50016 Zinc finger PHD-type profile.
Gene3D G3DSA:1.10.10.60 -
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
SMART SM00298 chromo_7
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger)
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
Pfam PF06461 CHD subfamily II, SANT-like domain
SMART SM01146 DUF1086_2
Pfam PF07432 Histone H1-like protein Hc1
PANTHER PTHR45623 CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED
CDD cd18659 CD2_tandem
Pfam PF00271 Helicase conserved C-terminal domain
Pfam PF00176 SNF2-related domain
SMART SM00490 helicmild6
SMART SM00249 PHD_3
Pfam PF06465 CHD subfamily II, DUF1087
SMART SM00487 ultradead3
Pfam PF00385 Chromo (CHRromatin Organisation MOdifier) domain
Gene3D G3DSA:3.40.50.300 -
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
Gene3D G3DSA:2.40.50.40 -
ProSitePatterns PS01359 Zinc finger PHD-type signature.
CDD cd18793 SF2_C_SNF
KOG KOG0384 Chromodomain-helicase DNA-binding protein; [K]
KOG KOG0825 PHD Zn-finger protein; C-term missing; [R]
MapolyID Mapoly0010s0012 -
GO GO:0005634 nucleus
GO GO:0005524 ATP binding
GO GO:0006338 chromatin remodeling
GO GO:0030527 structural constituent of chromatin
GO GO:0140658 ATP-dependent chromatin remodeler activity
GO GO:0016887 ATP hydrolysis activity
GO GO:0000785 chromatin
GO GO:0003677 DNA binding
GO GO:0003682 chromatin binding
GO GO:0042393 histone binding

Nomenclature

Gene symbol Product Transcript ID Status
Mpsnf1.17 Chromatin related protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp5g24460.1 chr5:31146578..31171217 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g24460.2 chr5:31146578..31171217 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g24460.3 chr5:31146578..31171217 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.