Mp6g12400



Description

Annotation

Database ID Description
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
Pfam PF07496 CW-type Zinc Finger
ProSiteProfiles PS51050 Zinc finger CW-type profile.
ProSiteProfiles PS50089 Zinc finger RING-type profile.
ProSiteProfiles PS50181 F-box domain profile.
Pfam PF00271 Helicase conserved C-terminal domain
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
Pfam PF00176 SNF2-related domain
Pfam PF12937 F-box-like
SUPERFAMILY SSF81383 F-box domain
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
CDD cd09917 F-box_SF
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:3.40.50.300 -
PANTHER PTHR45626 TRANSCRIPTION TERMINATION FACTOR 2-RELATED
Gene3D G3DSA:3.30.40.100 -
Gene3D G3DSA:3.40.50.10810 -
ProSitePatterns PS00518 Zinc finger RING-type signature.
SMART SM00490 helicmild6
CDD cd18793 SF2_C_SNF
SMART SM00487 ultradead3
Gene3D G3DSA:1.20.1280.50 -
KOG KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily; [KL]
KOG KOG1002 Nucleotide excision repair protein RAD16; N-term missing; C-term missing; [L]
MapolyID Mapoly0059s0106 -
GO GO:0005634 nucleus
GO GO:0008094 ATP-dependent activity, acting on DNA
GO GO:0005524 ATP binding
GO GO:0005515 protein binding
GO GO:0140658 ATP-dependent chromatin remodeler activity
GO GO:0008270 zinc ion binding
GO GO:0006281 DNA repair

Nomenclature

Gene symbol Product Transcript ID Status
Mpsnf1.18 Chromatin related protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp6g12400.1 chr6:15531509..15537506 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.