Mp6g12400



Description

Annotation

Database ID Description
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
Pfam PF07496 CW-type Zinc Finger
ProSiteProfiles PS51050 Zinc finger CW-type profile.
ProSiteProfiles PS50089 Zinc finger RING-type profile.
ProSiteProfiles PS50181 F-box domain profile.
Pfam PF00271 Helicase conserved C-terminal domain
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
Pfam PF00176 SNF2-related domain
Pfam PF12937 F-box-like
SUPERFAMILY SSF81383 F-box domain
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
CDD cd09917 F-box_SF
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:3.40.50.300 -
PANTHER PTHR45626 TRANSCRIPTION TERMINATION FACTOR 2-RELATED
Gene3D G3DSA:3.30.40.100 -
Gene3D G3DSA:3.40.50.10810 -
ProSitePatterns PS00518 Zinc finger RING-type signature.
SMART SM00490 helicmild6
CDD cd18793 SF2_C_SNF
SMART SM00487 ultradead3
Gene3D G3DSA:1.20.1280.50 -
KOG KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily; [KL]
KOG KOG1002 Nucleotide excision repair protein RAD16; N-term missing; C-term missing; [L]
MapolyID Mapoly0059s0106 -

Nomenclature

Gene symbol Product Transcript ID Status
Mpsnf1.18 Chromatin related protein Provisional

Expression Level powered by MBEX

Caution: MBEX data are analyzed based on the v6.1 genome.

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp6g12400.1 chr6:15531509..15537506 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.