Mp6g20340



Description

Annotation

Database ID Description
Pfam PF05964 F/Y-rich N-terminus
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:2.60.120.650 Cupin
ProSiteProfiles PS51542 FYR domain FYRN motif profile.
Pfam PF02375 jmjN domain
SMART SM00541 fyrn_3
PANTHER PTHR10694 LYSINE-SPECIFIC DEMETHYLASE
ProSiteProfiles PS51543 FYR domain FYRC motif profile.
SMART SM00558 cupin_9
Pfam PF02373 JmjC domain, hydroxylase
ProSiteProfiles PS51184 JmjC domain profile.
ProSiteProfiles PS51183 JmjN domain profile.
SUPERFAMILY SSF51197 Clavaminate synthase-like
Pfam PF02928 C5HC2 zinc finger
SMART SM00545 JmjN_1
Gene3D G3DSA:3.30.160.360 -
SMART SM00542 fyrc_3
Pfam PF05965 F/Y rich C-terminus
KEGG K11446 [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
KOG KOG1246 DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain; C-term missing; [R]
MapolyID Mapoly0045s0030 -
GO GO:0005634 nucleus
GO GO:0010468 regulation of gene expression
GO GO:0006338 chromatin remodeling
GO GO:0000785 chromatin
GO GO:0034647 histone H3K4me/H3K4me2/H3K4me3 demethylase activity
GO GO:0032452 histone demethylase activity

Nomenclature

Gene symbol Product Transcript ID Status
MpHDM7 Chromatin related protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp6g20340.1 chr6:26444359..26456318 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.