Mp7g11900



Description

Annotation

Database ID Description
Pfam PF00176 SNF2-related domain
Gene3D G3DSA:3.40.50.300 -
Pfam PF00097 Zinc finger, C3HC4 type (RING finger)
ProSiteProfiles PS50089 Zinc finger RING-type profile.
MobiDBLite mobidb-lite consensus disorder prediction
CDD cd18793 SF2_C_SNF
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
Pfam PF00271 Helicase conserved C-terminal domain
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger)
SMART SM00184 ring_2
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
PANTHER PTHR45626 TRANSCRIPTION TERMINATION FACTOR 2-RELATED
ProSitePatterns PS00518 Zinc finger RING-type signature.
Gene3D G3DSA:3.40.50.10810 -
SMART SM00487 ultradead3
SUPERFAMILY SSF57850 RING/U-box
CDD cd18008 DEXDc_SHPRH-like
SMART SM00490 helicmild6
KEGG K15083 DNA repair protein RAD16
KOG KOG1002 Nucleotide excision repair protein RAD16; [L]
MapolyID Mapoly0003s0201 -
GO GO:0005634 nucleus
GO GO:0008094 ATP-dependent activity, acting on DNA
GO GO:0046872 metal ion binding
GO GO:0005524 ATP binding
GO GO:0140658 ATP-dependent chromatin remodeler activity
GO GO:0006281 DNA repair
GO GO:0006289 nucleotide-excision repair

Nomenclature

Gene symbol Product Transcript ID Status
Mpsnf1.20 Chromatin related protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp7g11900.1 chr7:15150863..15158421 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.