Mp7g11900



Description

Annotation

Database ID Description
Pfam PF00176 SNF2-related domain
Gene3D G3DSA:3.40.50.300 -
Pfam PF00097 Zinc finger, C3HC4 type (RING finger)
ProSiteProfiles PS50089 Zinc finger RING-type profile.
MobiDBLite mobidb-lite consensus disorder prediction
CDD cd18793 SF2_C_SNF
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
Pfam PF00271 Helicase conserved C-terminal domain
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger)
SMART SM00184 ring_2
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
PANTHER PTHR45626 TRANSCRIPTION TERMINATION FACTOR 2-RELATED
ProSitePatterns PS00518 Zinc finger RING-type signature.
Gene3D G3DSA:3.40.50.10810 -
SMART SM00487 ultradead3
SUPERFAMILY SSF57850 RING/U-box
CDD cd18008 DEXDc_SHPRH-like
SMART SM00490 helicmild6
KEGG K15083 DNA repair protein RAD16
KOG KOG1002 Nucleotide excision repair protein RAD16; [L]
MapolyID Mapoly0003s0201 -

Nomenclature

Gene symbol Product Transcript ID Status
Mpsnf1.20 Chromatin related protein Provisional

Expression Level powered by MBEX

Caution: MBEX data are analyzed based on the v6.1 genome.

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp7g11900.1 chr7:15150863..15158421 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.