Mp7g12090



Description

Annotation

Database ID Description
ProSiteProfiles PS50137 Double stranded RNA-binding domain (dsRBD) profile.
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR14950 DICER-RELATED
Gene3D G3DSA:3.40.50.300 -
Pfam PF14709 double strand RNA binding domain from DEAD END PROTEIN 1
Pfam PF00035 Double-stranded RNA binding motif
SMART SM00949 PAZ_2_a_3
Gene3D G3DSA:3.30.160.20 -
Coils Coil Coil
SUPERFAMILY SSF54768 dsRNA-binding domain-like
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
SMART SM00535 riboneu5
FunFam G3DSA:1.10.1520.10:FF:000004 Endoribonuclease dicer-like 1
CDD cd18034 DEXHc_dicer
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
Pfam PF00270 DEAD/DEAH box helicase
FunFam G3DSA:3.30.160.20:FF:000032 endoribonuclease Dicer homolog 1
Gene3D G3DSA:3.30.160.380 Dicer dimerisation domain
CDD cd00593 RIBOc
SUPERFAMILY SSF69065 RNase III domain-like
SMART SM00487 ultradead3
Gene3D G3DSA:1.10.1520.10 Ribonuclease III domain
FunFam G3DSA:3.30.160.380:FF:000001 Endoribonuclease dicer-like 1
FunFam G3DSA:3.40.50.300:FF:000420 Endoribonuclease dicer-like 1
ProSitePatterns PS00517 Ribonuclease III family signature.
SMART SM00490 helicmild6
Pfam PF00636 Ribonuclease III domain
Gene3D G3DSA:2.170.260.10 paz domain
ProSiteProfiles PS51327 Dicer double-stranded RNA-binding fold domain profile.
SMART SM00358 DRBM_3
Pfam PF02170 PAZ domain
CDD cd18802 SF2_C_dicer
Pfam PF00271 Helicase conserved C-terminal domain
ProSiteProfiles PS50142 Ribonuclease III family domain profile.
CDD cd19869 DSRM_DCL_plant
SUPERFAMILY SSF101690 PAZ domain
ProSiteProfiles PS50821 PAZ domain profile.
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
FunFam G3DSA:1.10.1520.10:FF:000007 Endoribonuclease dicer-like protein
Pfam PF03368 Dicer dimerisation domain
FunFam G3DSA:3.40.50.300:FF:000705 Endoribonuclease dicer-like protein
KEGG K11592 endoribonuclease Dicer [EC:3.1.26.-]
KOG KOG0701 dsRNA-specific nuclease Dicer and related ribonucleases; [A]
KOG KOG3732 Staufen and related double-stranded-RNA-binding proteins; C-term missing; [UK]
KOG KOG0670 U4/U6-associated splicing factor PRP4; C-term missing; [A]
MapolyID Mapoly0003s0222 -
GO GO:0016891 RNA endonuclease activity, producing 5'-phosphomonoesters
GO GO:0005634 nucleus
GO GO:0003723 RNA binding
GO GO:0005524 ATP binding
GO GO:0030422 siRNA processing
GO GO:0005515 protein binding
GO GO:0006396 RNA processing
GO GO:0004525 ribonuclease III activity
GO GO:0005737 cytoplasm
GO GO:0003676 nucleic acid binding

Nomenclature

Gene symbol Product Transcript ID Status
MpDCL1b miRNA biogenesis protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp7g12090.1 chr7:15347794..15363942 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.