Mp7g16780



Description

Annotation

Database ID Description
SMART SM00249 PHD_3
CDD cd10518 SET_SETD1-like
SUPERFAMILY SSF63748 Tudor/PWWP/MBT
CDD cd15662 ePHD_ATX1_2_like
Gene3D G3DSA:2.170.270.10 SET domain
Pfam PF13831 PHD-finger
SMART SM00293 PWWP_4
MobiDBLite mobidb-lite consensus disorder prediction
CDD cd20404 Tudor_Agenet_AtEML-like
Pfam PF05964 F/Y-rich N-terminus
CDD cd20142 PWWP_AtATX1-like
SMART SM00542 fyrc_3
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger)
Gene3D G3DSA:2.30.30.140 -
ProSiteProfiles PS50016 Zinc finger PHD-type profile.
ProSitePatterns PS01359 Zinc finger PHD-type signature.
Pfam PF00856 SET domain
SUPERFAMILY SSF82199 SET domain
Pfam PF13832 PHD-zinc-finger like domain
ProSiteProfiles PS50868 Post-SET domain profile.
Pfam PF05965 F/Y rich C-terminus
ProSiteProfiles PS50280 SET domain profile.
PANTHER PTHR13793 PHD FINGER PROTEINS
SMART SM00541 fyrn_3
ProSiteProfiles PS51542 FYR domain FYRN motif profile.
ProSiteProfiles PS51805 Extended PHD (ePHD) domain profile.
CDD cd15494 PHD_ATX1_2_like
Gene3D G3DSA:3.30.160.360 -
Pfam PF00855 PWWP domain
SUPERFAMILY SSF57903 FYVE/PHD zinc finger
ProSiteProfiles PS51543 FYR domain FYRC motif profile.
SMART SM00317 set_7
ProSiteProfiles PS50812 PWWP domain profile.
KOG KOG1080 Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases; N-term missing; [BK]
KOG KOG1904 Transcription coactivator; C-term missing; [K]
KOG KOG1015 Transcription regulator XNP/ATRX, DEAD-box superfamily; C-term missing; [K]
MapolyID Mapoly0051s0016 -
GO GO:0005634 nucleus
GO GO:0006357 regulation of transcription by RNA polymerase II
GO GO:0005515 protein binding
GO GO:0018024 obsolete histone lysine N-methyltransferase activity
GO GO:0000785 chromatin

Nomenclature

Gene symbol Product Transcript ID Status
MpATX1 Chromatin related protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp7g16780.1 chr7:20995625..21012540 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp7g16780.2 chr7:20995625..21012540 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.