| Database | ID | Description |
|---|---|---|
| PANTHER | PTHR48025 | OS02G0815200 PROTEIN |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. |
| MobiDBLite | mobidb-lite | consensus disorder prediction |
| CDD | cd12234 | RRM1_AtRSp31_like |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD |
| Pfam | PF00076 | RNA recognition motif |
| Gene3D | G3DSA:3.30.70.330 | - |
| SMART | SM00360 | rrm1_1 |
| FunFam | G3DSA:3.30.70.330:FF:000294 | Serine/arginine-rich splicing factor RS31 |
| KOG | KOG0106 | Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily); [A] |
| MapolyID | Mapoly0186s0008 | - |
| GO | GO:0005634 | nucleus |
| GO | GO:0003729 | mRNA binding |
| GO | GO:0003723 | RNA binding |
| GO | GO:0003676 | nucleic acid binding |
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpSR6 | SR proteins, RNA-splicing | Provisional |
Sequences: |
Gene UTR + CDS + intron |
| >Mp8g04570.1 GAGCATGATA TTGATCTCAA AGGCATCTTC CACAAGTGGT TGGGACCCGA AACTCGTGAG CTCGAACTCA AGTCAAAGCA TCAGTTGCAG ATGAGTTAGA CTAGCGTCTA CATAAAACAC GACAAGCACG GGGGAGACCG CATCATCCAC AGAACTTGAC TTACAGGACA GAGCACTGTA AATTAATGAT AATCCACTAT TAAGAAGAGA TGCTGCACGA GCGAGTTGAG TACCTTTCCT GTTCCACATT GTTCTGTCTT GTAGACCCGA TTAGGAACTT AATCCGCTTT TGGTTGCGTT TGAATAGTCA ATTAGCACGT GCTCGGGCTG GTTAATTGGT CTCGATGGAC AAAGCGTCCT GGCGGTTGGA AACACGGAAA TCTTGTGAAA AAGCTCCGAA AAGGGTTTGC ATTTGGTCTG TGCTCGCGGT TTCTTCGGGC CTCGTGATCG ATCCAGACAC GAGGGCTCTT TTGGTGGTGA TCGAGGATCG ATCTCCCGGT CGCCTTCCTT CGTATCGATC CTGGTAGGTC TGTCCGTGCG TTGGTGCTGT CCGTTCTTTC TTTCCTTAGG TTAGGATCTT TTTCTGGACT GAGCATTTTT CGACGTGTTT TCTGCTCACC TTTATTTTGA CTTGATTTGT GCGGACCGAG GATTGGTCAT CTTCGCGTTT TGCCAGCACC TCGGGTACTT GACACGCCGT TCGGATTGTG GCCTGGAACG ATACGTTTGG ATTCGTGAAG GTCGTCATTG TTCAGGGTGA ACAGAATGTA TGTCTACTGA TTTGACATCT GTCGTTGTCA ATTTTTGGCC GTTCCTCTAC TCCTCCATTG CTAGGCTGTC CGATTGACTG GTCCGATTTC AGGTAGTATG CACACCTTGT CGGGGTTTCT TGGAATGCCA AAGGACTTAC GTACACATGA GCTGGAATTG GCTCTTGATT ACTTTCTTTG ATGTGATGGT GGAAATGCAC GCATTCTGTC GGTTGCTGAA ATCATTTGTC TAAACATCTT AGATGGGTCG GAGACTTAGA GGTTGGGTCG GAGTGTTCAT GGTTCAGACA TTTAAATGCG TTGGTTGCAG CTGTTGCTGC AATGTCGCGA AATCTTTCTA CTTTTTCTAC TATGTAGTAG TGATATGTCG ACAGTGATGC GAATACATTG CCGGAAATAA AATTCATATT TTTTTTTGCA TCATTGACTG TAATTTTGGA CCGTTAACAC ATCTTCTTCA ACTAAGTGAT AGCAGCTGTG ATTGTACTGT AGTGATCTAT TGCTGTTATG TACAACTGGT CGTTCTCTGT CTGTGCAATT AAAACGGATG GTCGCAAAGA GTGTAGTGTT TCTTGGACAG TTCATTAAAT CTCCTCTTGC GTCATTCCAC TTCAATTCTC TCGTTAGCTA TTGATGCGAT GGAGCAAACT TGCCTGACAG TGCATAGTAA ATATGTAAGC TCTGTCGTTT CTCACTGAGA TCCGGTTTTA GTGTTTTCCT TTTTCTTCTG TGTTACACCA GATGAATGGC TTACATAGGA AAGTGATCAT CCTGTGATCA TCTTCGTATG TGATGATAGG AGATGAAACT TGCCTCATAT GTGGGGCGTG ATCTTTTTTT CCTGTGTACT GTATTGTATT ATAATTTTAG TGTTCTTCTT GATGTTATTC TTGATAAAAT TTGGGGTGTT GAATTTCCAT AAATAAATTT TCGGAGGTTT ATCTCTCAAC AAGATTGTGC TACTTTTTAG GTTGTTTGCA TGAATCTAAT TCCAATGTTT CTTAGTCACA TATTATCCTC CCTTCCGGTC ATGTACTTTA CAAGATGTCT GCACGATGTC CCGACATATT TTAAGCCTTT TCAAGTCCGC TTTGGCTGCT GCTCAGCTGT AGGGATGACA TCTGTTATTT GCTTTTTTCT GATAGTCGCA TGAAGTAGGT CGAGAGAAGA AGTGGGGGCG AGACAGGTTA CACAGGAAGA AGACGCATCC TCTTTGCCAA AGCTAATTGT CAGTAAGCAA GATGGCAAGG ATGCGGCCTG TGTTCTGTGG GAACTTTGAG TATGATGCAC GCCAATCCGA GATCGAGAGG ATGTTCACGA AGTATGGGAA GGTGGAACGT GTGGATATGA AAACAGGTAC GCATCCTGCC TTTGAAATTC TTGAATAATT ACTCTCAGAT ATTGAGAATG GCAGCACTCG ACTCTTCCAA GCTCAGTATA CACCATTGAA GCTCAACTCT TTTCGCCAGG GAAAGGTGTT GAAGGAAATG GATCTCAATT TTGTTGAGCT CTCCAATTGT TTGTCAACGT TTGATTCGGC ATTGGAAAAG TCCAGATTTT CAAGCAGACT TAGAAGACAT CACTAGTGCG ACTTTTTCCG GAGGTGTCAA TGTACCAAGA GGTTGTTAAT TTCAGTTTAG CAATATAATA TGTCATATCG TAACTTCTCT TAGATGCAAG TTGCATCAAG AGTTTTGAGG CCTGCTTATC CTGATAGTTT ATTCTTGGTG TCATTATCGT GAGCAGTTCA TTTCCTTTGA TATATCAGAT AACTGTGAAA ATTGACCTAG CGAGTCAATG TCTCGTGTGC TGAATATCCG AATGAGATCT GTTTATCTAC TTACCAATCA TAGACTACTC TTTCCCTGGT AGATGAACTA GTTAGGCTTC AGATCTGCTT CTCCCATGTA GTCTTGTCGC CATAGCTGCA GTTTCACTGT AATGAACATT GAAACATGAG TGGCTAATGT GGATTTGTAG GTGAATCTAG TGTACTTAAG GATTGGTGTG GCAACGCAGG CGGTTCCACA GAGCTGGGAT GCTCTTTGTT TGCCCCTTCA GTTCATGCCA ACAGTTGCTC CACTGTCAGA GCATCAACGT CCAACAAAAC TTGCCGAGGC CACCAGTTGC ATCCACTTAT CATCTTCAGA TCATCATTTT TGTCATACCT CCCACTGTCA TCAGAGTGGT CATGTCAGCA TCTCGCTTGT CCTCGTGATC ATGTCGACCA CGTGTGCGGC AGAATCATAT AGATACTCAG GACAGACTTC AGCTGCTGGA GCAACATTAT TGGAGCAGAT TTGGCTGACT CTTGCCGTTT TGTCAACATC CTTACACTCA ATTTCAATCC TGGCTGCCTT TGATGCACAC GGTCATCAGA GCCTTCCTGA AGCACATCGT CCTTAGTGCA TCATGCAACG TTCTTCCTGA CATCGTACTT TTGTGCAACC AACATGATGA AGTCCAGGTG TTGTGATTGA CCATTCTTTT GTAAACCATG TATTGTGGGT CCCTTGTGGA TCCCTTCCTG CAGCATATCT GCCAATAATG TGAGAATGCT TGTGTCTTGG GTCAGCACAG ACTAAACTTG TAACATTGCA TAATTAACTT CTAGCTTTGA ATGGCAGGGT TTGCTTTTGT TTATATGGAA GACGAACGAG ACGCCGAGGA TGCCATCCGC GCTTTGGACA ACACAGAGTT TGGAAGACAA AGACGGCGAC TTTGTGTCGA ATGGGCTAAG GTGACTCCTG TGAGCAATCA ATCTTAGCGG TAGATTTTCA TTTCTTCTCA GAGAACTTAT CAACTGTCTC CTTCCTTACG CTTTCGACTC CCCTGTACTT GACCTCATAT CAACCAGTCT TTCCCTTTTC CCAAGATTTT TTTGTCTGTG TTCTTCATGT AAAACTAGGA CAGCCAGTTC TACCTCGATT CAAATGGACA TGTTCTCAGC CTAGATATCA GTTTGACAGT TTCAGCAAGT TCTTCTTGGT TGATTTGATC ATCTTTCAAA TCGGTTTGTT TGTGGAATGG TCTTTCTTTT TCAGTCTGTA TGTTGTGCAA TCATACGAGC ATCAGTATCC AGTTTCTGAA TAGACGTACC TCAGCAATTT TAATTTCCAA CTCTTACTTT ACTACTACTC ATTGTTCTTC TACTATGTAC CAGGGTGTTC ATCTCACCTG AAATAGTTTC ACGTTCTTAA ATTTCTTGTG CCTTTCCTCA ACAGCAAGGC GACGGCGCCA TTCGCCGGCG AGAGGATGCT CGCAGAAGTA TCACAAAGCA GCGACCAACG AAAACTCTAT TTGTTGTAAA CTTTGACCCC ATCCACACAA GAGTTCGTGA CTTGGAACGA CACTTCGAAC CGTATGGGAA GCTTCTTCGA GTGCAGATAC GCAAGAATTT TGCATTTGTA CAGTATGAAA CACAGGAGGA GGCAACCAAA GCATTGGAAT GCACAAATAT GAGGTTATTT TAAGCTTCAG CTGTATTGTT AGCCTGTTTA GTGTCGGTAG AGTGTCGTGG GCGGGCTGTT TATGATGGTT TTATCCGATC AGATTTTGAG CAGTTTTTGA AGAGGATCAT CAGAAAATTT GAGTACAAAT AGTCCAATAC ACTGTTTATA CCTTTTCATT TCGCTGGTAC CGGTACCATG TATAGAGACC CCCACATTCT CTGCAGCTCA CCTGACTCAT GGCTTCGATG AGATTCGCAG CAAGGTTATG GAGCGAGTCA TAACCGTGGA GTACGCTGCT CGAGAAGACG GAGACCCGCC TACAAGTGTT GGTGGAACTA GTAATGGATT TGGTGGAGGC TCTCGGCGTA GTTCAAGTCC TGCAGGGCGA GGACGAGGAA GCATTGGTGC AGGAGGAGGA GCAAGGAGTA GCCCTGACTA TGGACGAGCT CGCAGTCCCA CCTATGGACG ATACCGGAGG TGCGTTTGCA ACTTAATTTG CTTATTTGGA ACAAATGCAT TCCTCAAAGA ACGGTGTCTA TTGTGACAGA CCCAATGATG CGTTTTGCAA GCACAGCCAA AGGTTTGATG GCTAACATTT TCACTCTCCT GCTTATTTGT GTTCAACAGT CGTTCACCAC CTCGGCGCTA CCGCAGTCGA TCACCTGACT ACAGACCATA TGCTGGAAGT CACCGTGATG CCCGTGGTTA GCCAGCGGAC AGTCATTGAT CAAGAGATCT TTTTGTACAA CAACTTAGCT GCATCTGGGA AATGGATAGC AAGAAATTCA GTCACTCAGT TTATGGGTTT GACAGCAAAG TATTGCACGT GAAAATCCAA ATGATTTTTC GGCCCAGAGT TCGCTAAAAG AATTTTGACT AGATAAGATG ACTTTATTGG GTGCTCAATC CATGTAGTCG GCATCAGTCG CCCCCGAATT ATTTTGATAG GGTTAGATGT AGTACGCAGT TTTGGTGGCC GATCGAATAA AGTCAGGCAT TTGTTGTAGT TCGCTACCGC TAACTACAGG AGTTTTTCGT CTTAGAGAAG AGTCTTAGTT CGACCTCTTA GCAGCGTAGC AATTCTGGAG CCCATCTGTG AAGTATAGAG CTGGATCATT AGTAGTAAGA TTGAAATATT ACTAGAGACG ACGACTGTGT CCGGACCAAG AATGTATTTT AACATGAAAT TGTCGAGTTG GACAAACCTT CGACGCTTTC ACTAGCTTAA TGGCTTGCCT TCCAAGAGTA CTCCT |
mRNA UTR + CDS |
| >Mp8g04570.1 GAGCATGATA TTGATCTCAA AGGCATCTTC CACAAGTGGT TGGGACCCGA AACTCGTGAG CTCGAACTCA AGTCAAAGCA TCAGTTGCAG ATGAGTTAGA CTAGCGTCTA CATAAAACAC GACAAGCACG GGGGAGACCG CATCATCCAC AGAACTTGAC TTACAGGACA GAGCACTGTA AATTAATGAT AATCCACTAT TAAGAAGAGA TGCTGCACGA GCGAGTTGAG TACCTTTCCT GTTCCACATT GTTCTGTCTT GTAGACCCGA TTAGGAACTT AATCCGCTTT TGGTTGCGTT TGAATAGTCA ATTAGCACGT GCTCGGGCTG GTTAATTGGT CTCGATGGAC AAAGCGTCCT GGCGGTTGGA AACACGGAAA TCTTGTGAAA AAGCTCCGAA AAGGGTTTGC ATTTGGTCTG TGCTCGCGGT TTCTTCGGGC CTCGTGATCG ATCCAGACAC GAGGGCTCTT TTGGTGGTGA TCGAGGATCG ATCTCCCGGT CGCCTTCCTT CGTATCGATC CTGGTAGGTC TGTCCGTGCG TTGGTGCTGT CCGTTCTTTC TTTCCTTAGG TTAGGATCTT TTTCTGGACT GAGCATTTTT CGACGTGTTT TCTGCTCACC TTTATTTTGA CTTGATTTGT GCGGACCGAG GATTGGTCAT CTTCGCGTTT TGCCAGCACC TCGGGTACTT GACACGCCGT TCGGATTGTG GCCTGGAACG ATACGTTTGG ATTCGTGAAG GTCGTCATTG TTCAGGGTGA ACAGAATTCG CATGAAGTAG GTCGAGAGAA GAAGTGGGGG CGAGACAGGT TACACAGGAA GAAGACGCAT CCTCTTTGCC AAAGCTAATT GTCAGTAAGC AAGATGGCAA GGATGCGGCC TGTGTTCTGT GGGAACTTTG AGTATGATGC ACGCCAATCC GAGATCGAGA GGATGTTCAC GAAGTATGGG AAGGTGGAAC GTGTGGATAT GAAAACAGGG TTTGCTTTTG TTTATATGGA AGACGAACGA GACGCCGAGG ATGCCATCCG CGCTTTGGAC AACACAGAGT TTGGAAGACA AAGACGGCGA CTTTGTGTCG AATGGGCTAA GCAAGGCGAC GGCGCCATTC GCCGGCGAGA GGATGCTCGC AGAAGTATCA CAAAGCAGCG ACCAACGAAA ACTCTATTTG TTGTAAACTT TGACCCCATC CACACAAGAG TTCGTGACTT GGAACGACAC TTCGAACCGT ATGGGAAGCT TCTTCGAGTG CAGATACGCA AGAATTTTGC ATTTGTACAG TATGAAACAC AGGAGGAGGC AACCAAAGCA TTGGAATGCA CAAATATGAG CAAGGTTATG GAGCGAGTCA TAACCGTGGA GTACGCTGCT CGAGAAGACG GAGACCCGCC TACAAGTGTT GGTGGAACTA GTAATGGATT TGGTGGAGGC TCTCGGCGTA GTTCAAGTCC TGCAGGGCGA GGACGAGGAA GCATTGGTGC AGGAGGAGGA GCAAGGAGTA GCCCTGACTA TGGACGAGCT CGCAGTCCCA CCTATGGACG ATACCGGAGT CGTTCACCAC CTCGGCGCTA CCGCAGTCGA TCACCTGACT ACAGACCATA TGCTGGAAGT CACCGTGATG CCCGTGGTTA GCCAGCGGAC AGTCATTGAT CAAGAGATCT TTTTGTACAA CAACTTAGCT GCATCTGGGA AATGGATAGC AAGAAATTCA GTCACTCAGT TTATGGGTTT GACAGCAAAG TATTGCACGT GAAAATCCAA ATGATTTTTC GGCCCAGAGT TCGCTAAAAG AATTTTGACT AGATAAGATG ACTTTATTGG GTGCTCAATC CATGTAGTCG GCATCAGTCG CCCCCGAATT ATTTTGATAG GGTTAGATGT AGTACGCAGT TTTGGTGGCC GATCGAATAA AGTCAGGCAT TTGTTGTAGT TCGCTACCGC TAACTACAGG AGTTTTTCGT CTTAGAGAAG AGTCTTAGTT CGACCTCTTA GCAGCGTAGC AATTCTGGAG CCCATCTGTG AAGTATAGAG CTGGATCATT AGTAGTAAGA TTGAAATATT ACTAGAGACG ACGACTGTGT CCGGACCAAG AATGTATTTT AACATGAAAT TGTCGAGTTG GACAAACCTT CGACGCTTTC ACTAGCTTAA TGGCTTGCCT TCCAAGAGTA CTCCT |
CDS |
| >Mp8g04570.1 ATGGCAAGGA TGCGGCCTGT GTTCTGTGGG AACTTTGAGT ATGATGCACG CCAATCCGAG ATCGAGAGGA TGTTCACGAA GTATGGGAAG GTGGAACGTG TGGATATGAA AACAGGGTTT GCTTTTGTTT ATATGGAAGA CGAACGAGAC GCCGAGGATG CCATCCGCGC TTTGGACAAC ACAGAGTTTG GAAGACAAAG ACGGCGACTT TGTGTCGAAT GGGCTAAGCA AGGCGACGGC GCCATTCGCC GGCGAGAGGA TGCTCGCAGA AGTATCACAA AGCAGCGACC AACGAAAACT CTATTTGTTG TAAACTTTGA CCCCATCCAC ACAAGAGTTC GTGACTTGGA ACGACACTTC GAACCGTATG GGAAGCTTCT TCGAGTGCAG ATACGCAAGA ATTTTGCATT TGTACAGTAT GAAACACAGG AGGAGGCAAC CAAAGCATTG GAATGCACAA ATATGAGCAA GGTTATGGAG CGAGTCATAA CCGTGGAGTA CGCTGCTCGA GAAGACGGAG ACCCGCCTAC AAGTGTTGGT GGAACTAGTA ATGGATTTGG TGGAGGCTCT CGGCGTAGTT CAAGTCCTGC AGGGCGAGGA CGAGGAAGCA TTGGTGCAGG AGGAGGAGCA AGGAGTAGCC CTGACTATGG ACGAGCTCGC AGTCCCACCT ATGGACGATA CCGGAGTCGT TCACCACCTC GGCGCTACCG CAGTCGATCA CCTGACTACA GACCATATGC TGGAAGTCAC CGTGATGCCC GTGGTTAG |
Protein |
| >Mp8g04570.1 MARMRPVFCG NFEYDARQSE IERMFTKYGK VERVDMKTGF AFVYMEDERD AEDAIRALDN TEFGRQRRRL CVEWAKQGDG AIRRREDARR SITKQRPTKT LFVVNFDPIH TRVRDLERHF EPYGKLLRVQ IRKNFAFVQY ETQEEATKAL ECTNMSKVME RVITVEYAAR EDGDPPTSVG GTSNGFGGGS RRSSSPAGRG RGSIGAGGGA RSSPDYGRAR SPTYGRYRSR SPPRRYRSRS PDYRPYAGSH RDARG |