Mp8g05230



Description

Annotation

Database ID Description
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
ProSiteProfiles PS50089 Zinc finger RING-type profile.
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF00271 Helicase conserved C-terminal domain
ProSitePatterns PS00518 Zinc finger RING-type signature.
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger)
CDD cd18793 SF2_C_SNF
SMART SM00490 helicmild6
Pfam PF00176 SNF2-related domain
FunFam G3DSA:3.40.50.10810:FF:000071 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein
Gene3D G3DSA:3.40.50.10810 -
CDD cd18008 DEXDc_SHPRH-like
SMART SM00487 ultradead3
SUPERFAMILY SSF57850 RING/U-box
Gene3D G3DSA:3.40.50.300 -
FunFam G3DSA:3.40.50.10810:FF:000068 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein
PANTHER PTHR45626 TRANSCRIPTION TERMINATION FACTOR 2-RELATED
KOG KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily; [KL]
MapolyID Mapoly0081s0024 -
GO GO:0005634 nucleus
GO GO:0008094 ATP-dependent activity, acting on DNA
GO GO:0005524 ATP binding
GO GO:0140658 ATP-dependent chromatin remodeler activity
GO GO:0006281 DNA repair

Nomenclature

Gene symbol Product Transcript ID Status
Mpsnf1.22 Chromatin related protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp8g05230.1 chr8:7330562..7345419 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.