Sigma-70 region 3 // Sigma-70 region 2 // Sigma-70, region 4
| Database | ID | Description |
|---|---|---|
| PFAM | PF04539 | Sigma-70 region 3 |
| GO | GO:0003677 | DNA binding |
| PANTHER | PTHR30603 | RNA POLYMERASE SIGMA FACTOR RPO |
| GO | GO:0006355 | regulation of transcription, DNA-dependent |
| GO | GO:0006352 | DNA-dependent transcription, initiation |
| GO | GO:0003700 | sequence-specific DNA binding transcription factor activity |
| PFAM | PF04542 | Sigma-70 region 2 |
| PFAM | PF04545 | Sigma-70, region 4 |
| GO | GO:0016987 | sigma factor activity |
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpSIGX | Similar gene of Arabidopsis plastid RNA polymerase sigma factor genes | Published |
Sequences: |
Gene UTR + CDS + intron |
| >Mapoly0007s0071.1 GTCGCAGCCT TCCGCGTTCG AAGACGAGGA GAAGCCGCGG ACATGCGAAG GGCCTCAACG TCGGAATTCG GGCAGAGGTG CATACAAAGA AGTCATGGCA TCGATACTCG CACATTGCGC ATGCTCAAAT TGGAGACTTT CCGATGCAAG GCAGAAGCAG GAGTCTCAGT AGAAGACACA ATCATCTCCT CCCCAGGGAA TGATATGCCG GAAAAATCTC CAACCACCTC GACACCTGGA CTGATATGTT GCACGCTCGC AAAGGCGCCG GGGTCGGCTT AGATGCCAAT TATTTGTCAA AGTAGTTGCG TTCGTTGTGA GGTTGCTGGT CGGGAAGAAA TCAGTGATCC TACTTCTGCA GCGTTGTGCC GGCCTGTTGT TCCAGGCATG AATTTGGAGT GCATACCATC GGATGGATCG GACTTGTGAT TGAGGTTTTG TAATCTCAAG CTATGAACTT TAGCAGGTCG TTTGGAAGAG TGACCGATGG AAGCGATGGT TTCAGTTCAG TTTGTAAAGT TTGCGAGCTT TAGCTCCGCG TTCTGGTCAT CTGAACCATA TACCAGGGGC TATGTTAGAG CTGCAACGAG AACTCGATTT CCGGGAACCA GCCTGGCAGT TGTACAGAAG GCTGAGTCTG GGCGCAGAAC AGGGTCCTCC TCACATGTTG ATGTCACAGA GTCTTCGGAG CGAGTTAATG CGCAAGGGAG CAGGAAATTT GATCGTGTGA GTACCTTTAG CGACGTCAAT TCTGCTAGTA AGGCACTCTG CGGCAATTGT GTGCAAAGGG TTTTAAATGA GGAAACTCGT GTTTCGTGGC TAAGTCACCA CCTAAAAGAA TATGGAAGGG CTTGCAGTGC TCTGTAAAAA AGAATACGGG TGTTTTGCTT GCAAGCCAAC TTTTTACGTA CGTCAACACG GGTTGTCAAC GTCCACGACG AAGATTCGAC CTGGGATTTA TGCTCTTCAG ATTCTTTTGC ATTTCTACTT TTCTTTCAGA AACCTTGTCG GACCGCACGA ATTTCGCAGT GAATGTCGAC GATTTGTAAT CGATATATAT TTGAGCTAGG AATGTATATT CCTAGCTCTT CAAAATCTGG AGTTTAATGT CGATTAACTG AAAGTGCTTG ACAAATGTTG TATTCGATGG CTTTCAATCC AATCAATAAC AAGTTGGTCT TCCGAATTAT GAGCATGACT GCCGATTTGA ACATCCTTGA TCTACAGGTT TCCGCTCATG CGATCGATGA AGATGATTCA ACACCGGTTA AAGGTTCTTC CCATTGGCCA AGGATAGAAG GTGCTAGTAA TCCACTTACT TCCGAAGAGG AATCGGTCCT AGCTGCAGAG GTTCAGGTTT GTAGAAAGAA AACTTTGACA ACTTTGCTGC TTCAAAACCT CCTGCCATAA TGAATCAGTT CATGTATGTG TCTAAACTTT GTGAGGTACA GTTTCTGGTC ATCATGCCCT CCAGTTTCTA ATGGATAATA AATGATAACC TAGGCATTCA ACTTCCTTTG TCCGAGTTTC CTTCTGGTTT CGATGGGAAT AGAGAATTTG TGTTCTTTTT TTCACCCGCA GATTTGAACG TCCCTGGTTA TATTCAGGAT TTGGTTCAAT TACAGCGCCA GAGAGATGAG TTAGAGGCAA AGCTAGGGAG AACTCCAAGC GTTGAAGAAT GGGCAGATTT TGTCGGAAGC TCGGTTTTCC GTCTGTATGC AAGGTATGAA AAACCTCAAT GTTCAAGGTG ATAAACTGAG TTTGTATCTG TGCCTAACTG TCCATTACGT ATGAAGAATA GAGGAGGTAC AAATGTTAGA AGTAATCGGG CAACTTGTTT GTTCTTACTC TAATAACAGG TGAGTAGTGC ATTATTTTCA CACATCTGAT CTATCTGCGA GTGTATTCCT TACTTTTCAA TTCGACTTAT GATTCTAGAA TCGGAAGGGG CCGGGCAGCC AAGAGAAAAA TGGTTTCTGC AAATCTACCT CTTGTTCATT CAGTCGCTGG ACGGTTTCTT GGGAAAGGAC TTTCTCATAC AGAATTGTGC CAGGTCAGCG ATTCTTTATC GTTCTTGCAT TTGATGGTCA TGATCTTGTA ACTTAAGTTA GTTGAATTGT TTGCTCTTCT CCTGGAAAGT CTTCCTCGTT GGACTGCATT TTCTCTTGTT CCTATTTCTG GCTGAAACAA CTTTGAATTT GAACACCATC ATATTGAACT CGGTGTCTAC GGTCTTCAGG TTATGACAGT CAAATAATAA TCAGCTGATT GAACAGGAAG GAGTTTTGGG TCTTTTAAAG AGCACGGAGA AGTATGATAC ATCTTATAAG ACGAAATTTT CTTCGTACAC CTTCTTATGG ATATGGGAGG TAAGTTCCAG AGGTTTGAGA ATCATATTTA TGTACCTAAG TGATTGAACC TGCGGTTTCG ATGTTTTTCA GTTGATCCCT TTCTTGCTTG TGAGCATAGA TTCACATAAT CGATTAATAT ATTTTCATGG AGTATTTACA GGGCATGTCT GCAGCTGTAA AGAAATTTCG TCACGTTTTA CGTATTAGCA GGACTGTTTA CGAAACCGCT TCATTGGTTC TTCGGCACAA AGAGGTAAAC TTTGGGGCCC TTTTCGTTTT CTAGTCATCA TGATCGTCTC ATGTAGCTTC CTATTGTTGT GCCCTTGTTA CTATTGAAGC CTTAGTCAAT TCACCATACA TGAGCAAGCA ACACGGCACA TTGAGGTACT CAGTCAAAAA GATGTAACAA ATGCTTGAAT TGATCGGCTT GACGGTTTTT CTTCGCGCAA GAAGACTTAA GACACAGTCG AAATAATACG TAAGGAAAAA TTTTTCAGTC TTGACCCATC TTGTTGTGTC GATTGGCCTC CTTGCTTTGT CTAAAAGCTT TACATCGTCC TAGTTGCATT GTATACTGAG ACGCCGAATG CGATTGTGTC CAAATTCAGA ACAGTTTGAG CAGGTGTATT GGCAATAGAA CTTACCGACT TTGATGCTTT ACAGGAATTC CAGTCTTCAC ACGGGAGAGA ACCTACTTTA CAAGAGCTGG CTGATTTGTC ACTCGTTGAT AAAGATACGG TAAGTTTGAC TTCCTTTTTT TGTTCAGAAA AGTTTTCGGA TTTGCTACAA CTTGAAATTT TGGTGTTAAA CTGATACCGT TTGGACGGGG TATATACTTC ATTCAAACTA TTGTCCGATA CTCTATGTTA GTAGAGTGAA ACATTGAAGT ACCCACGGGC GTGATTTACA GTCTCAAAAG TAAGGCCTTG GAGTATTCCG CGGGTCGTAC GTACGATATA AAAAACGGTG AATTTATGTT TCTTGTTGAT CCTTCAAATT CGTTCGCCCT ATTTTCAGAT TCGGAATACC ATGAGACTAG TCAGACCTGC AAAGTCACTG GAACAAATGG TCTCAACTGT TGATGGGGAG TATGAGAAGC AGGTTGCAGA TCCAGACCGC AGCGTTCGTC CTTGGTTTGT AAGTAGTGAC ACTGAAGCAT TTTATTATTC CGCATTTCAA CACTCCAATG TCAAATTTCA TGACAGTACA ATAAACCGTC ACTTACCCTG CTTGAGGGCA TGGTACGCCG TATGCTCAAA AGTCGTCGTT TCGGCCTTCG GTAAATCTTT TAGGTTCTGG TGTTTATGAA TAGGAGGCTA CCCAGCATCT CGTTGTACTT GAGAGTAGTA TCGTTCCGTG CTTCTTCCAC TACTTATTGA TGGAAATCTC TTGGACGTCT GATCTGAAGC AAGTATTTTC AAAATGAGTG CCGTTGGCGT TGCAACTGTT AAATTTGTTT CTGCTTGGAG AGAAGTTTCT CAAGGTTTTT ATAACTGTGA TTTCAGCACT TGAGAGACGA AGACATGAAG ATGGACATAA ACAACGCCCT TCATAGTCTT AGTTCTCGCG AGCAGGAAGT ATGCAACTTT CTTGATACTA CACATATGTT TAATTCAGTG GTTTACCACC ATGTTGAATG CTATCGAATT TTTTTTGAAT CTGGTGGGTG CATTTTCTGT CTTTGGACTT TAGCCTATGA TAGGTACATT GTAATGAGTA CAAATTTCTT TGCCTTTGAA GGTCCTAGAA ATGCGATATG GACTAGATGG GAAGAGACCT CTTTCCAGAG CAGAGGTATC ACTTCTCCCT CTTTGACACC AATAATTAAG AGTGCGAGAG CAGTTCTCAA TCTTTTCTTC ATGAAGTCAT CACCTGTAGC TTTATTTCTT GATCAACTTT GTCCTCAAAG GGCAGGTTAT ATTTTCGAGT CACCCTTCTA TCCAGAATGC TTATAATGCT TTTGAGAGGT AGCAGCTAAG AAACTATGAC GTCCACTTCA CCTATCTCTT GGTATATACT GTAGTCTGGT ATCAAGTGAA TGTCATGGTG TTGTCTATGA GCTGACGGAA GTGAGTTCTG TCAACTTTTC ACACCCTAGA TATGGTCATC ATCGTGCCTA CGTCTGATCA TCCCTTCTTG GTATGGTGCA GGTTGCATCG TTGATGAACT TGTCCTACGA GACCATACGT CTGACAGAGG TATGACCACG AAACCGCTTT TGTACGAAAC CATAATGACC ATCTACTTTT AGTTTTGAAG TCATATAATG AAGTTCGCTA TTGCATTTTT TCTCTTCAAT GACAATTGTA GCATATAGTT TTTGGAACCT GATAATATTG TGGGTTTATG CACGAGCAGA AGAAAGCACT TGGAAAACTT CGACACATAG CAAAAGAAGA TGGACTACAA GCTTATCTTT CGAGAACTTT CTGGGATCAG TAAGCAGGAT GAAGGTCAAA ACATTTTTAG TCCGGGTGGC ATGATCAGCG GACACAAGTC ATGGAACTTA GGGATCGTTA GAGGATTTTG GAGGAAACAT CTGCCATTGT CTATATCAAG TCACAAAATG ATGTTGAAGA GCGTGAGTTA ACTTACTTCT TTCTTTCTAG ACATGAAAGT AAATTTTTGA CGTCCAAGGG GCATAAATCG GGAGGGATGT GCTTTTCCTC ATATGACAAA ATCTCAGTTT TTCATCAGAA CATTTTAGTC ACTACTATTT TTTGAGATAA ATGTATATTT AGTGTTATCA TTCTTTTAGA GTTTTCCCTT TCATATGGGA TCTCTTGCAC GGCTAGCAGG GTTCATTGTT TCCCCCGCCG GAATAAAGAG CATTCGACCT TGCACTGGAA AAAGGTTTTA ACTCATACTA GGTTGCGTTA CTTGAGACGA TACTTTGAAT CCTAGTTATG GGTCCTTAAC ACGTACTG |
mRNA UTR + CDS |
| >Mapoly0007s0071.1 GTCGCAGCCT TCCGCGTTCG AAGACGAGGA GAAGCCGCGG ACATGCGAAG GGCCTCAACG TCGGAATTCG GGCAGAGGTG CATACAAAGA AGTCATGGCA TCGATACTCG CACATTGCGC ATGCTCAAAT TGGAGACTTT CCGATGCAAG GCAGAAGCAG GAGTCTCAGT AGAAGACACA ATCATCTCCT CCCCAGGGAA TGATATGCCG GAAAAATCTC CAACCACCTC GACACCTGGA CTGATATGTT GCACGCTCGC AAAGGCGCCG GGGTCGGCTT AGATGCCAAT TATTTGTCAA AGTAGTTGCG TTCGTTGTGA GGTTGCTGGT CGGGAAGAAA TCAGTGATCC TACTTCTGCA GCGTTGTGCC GGCCTGTTGT TCCAGGCATG AATTTGGAGT GCATACCATC GGATGGATCG GACTTGTGAT TGAGGTTTTG TAATCTCAAG CTATGAACTT TAGCAGGTCG TTTGGAAGAG TGACCGATGG AAGCGATGGT TTCAGTTCAG TTTGTAAAGT TTGCGAGCTT TAGCTCCGCG TTCTGGTCAT CTGAACCATA TACCAGGGGC TATGTTAGAG CTGCAACGAG AACTCGATTT CCGGGAACCA GCCTGGCAGT TGTACAGAAG GCTGAGTCTG GGCGCAGAAC AGGGTCCTCC TCACATGTTG ATGTCACAGA GTCTTCGGAG CGAGTTAATG CGCAAGGGAG CAGGAAATTT GATCGTGTTT CCGCTCATGC GATCGATGAA GATGATTCAA CACCGGTTAA AGGTTCTTCC CATTGGCCAA GGATAGAAGG TGCTAGTAAT CCACTTACTT CCGAAGAGGA ATCGGTCCTA GCTGCAGAGG TTCAGGATTT GGTTCAATTA CAGCGCCAGA GAGATGAGTT AGAGGCAAAG CTAGGGAGAA CTCCAAGCGT TGAAGAATGG GCAGATTTTG TCGGAAGCTC GGTTTTCCGT CTGTATGCAA GAATCGGAAG GGGCCGGGCA GCCAAGAGAA AAATGGTTTC TGCAAATCTA CCTCTTGTTC ATTCAGTCGC TGGACGGTTT CTTGGGAAAG GACTTTCTCA TACAGAATTG TGCCAGGAAG GAGTTTTGGG TCTTTTAAAG AGCACGGAGA AGTATGATAC ATCTTATAAG ACGAAATTTT CTTCGTACAC CTTCTTATGG ATATGGGAGG GCATGTCTGC AGCTGTAAAG AAATTTCGTC ACGTTTTACG TATTAGCAGG ACTGTTTACG AAACCGCTTC ATTGGTTCTT CGGCACAAAG AGGAATTCCA GTCTTCACAC GGGAGAGAAC CTACTTTACA AGAGCTGGCT GATTTGTCAC TCGTTGATAA AGATACGATT CGGAATACCA TGAGACTAGT CAGACCTGCA AAGTCACTGG AACAAATGGT CTCAACTGTT GATGGGGAGT ATGAGAAGCA GGTTGCAGAT CCAGACCGCA GCGTTCGTCC TTGGTTTCAC TTGAGAGACG AAGACATGAA GATGGACATA AACAACGCCC TTCATAGTCT TAGTTCTCGC GAGCAGGAAG TCCTAGAAAT GCGATATGGA CTAGATGGGA AGAGACCTCT TTCCAGAGCA GAGGTTGCAT CGTTGATGAA CTTGTCCTAC GAGACCATAC GTCTGACAGA GAAGAAAGCA CTTGGAAAAC TTCGACACAT AGCAAAAGAA GATGGACTAC AAGCTTATCT TTCGAGAACT TTCTGGGATC AGTAAGCAGG ATGAAGGTCA AAACATTTTT AGTCCGGGTG GCATGATCAG CGGACACAAG TCATGGAACT TAGGGATCGT TAGAGGATTT TGGAGGAAAC ATCTGCCATT GTCTATATCA AGTCACAAAA TGATGTTGAA GAGCGTGAGT TAACTTACTT CTTTCTTTCT AGACATGAAA GTAAATTTTT GACGTCCAAG GGGCATAAAT CGGGAGGGAT GTGCTTTTCC TCATATGACA AAATCTCAGT TTTTCATCAG AACATTTTAG TCACTACTAT TTTTTGAGAT AAATGTATAT TTAGTGTTAT CATTCTTTTA GAGTTTTCCC TTTCATATGG GATCTCTTGC ACGGCTAGCA GGGTTCATTG TTTCCCCCGC CGGAATAAAG AGCATTCGAC CTTGCACTGG AAAAAGGTTT TAACTCATAC TAGGTTGCGT TACTTGAGAC GATACTTTGA ATCCTAGTTA TGGGTCCTTA ACACGTACTG |
CDS |
| >Mapoly0007s0071.1 ATGGAAGCGA TGGTTTCAGT TCAGTTTGTA AAGTTTGCGA GCTTTAGCTC CGCGTTCTGG TCATCTGAAC CATATACCAG GGGCTATGTT AGAGCTGCAA CGAGAACTCG ATTTCCGGGA ACCAGCCTGG CAGTTGTACA GAAGGCTGAG TCTGGGCGCA GAACAGGGTC CTCCTCACAT GTTGATGTCA CAGAGTCTTC GGAGCGAGTT AATGCGCAAG GGAGCAGGAA ATTTGATCGT GTTTCCGCTC ATGCGATCGA TGAAGATGAT TCAACACCGG TTAAAGGTTC TTCCCATTGG CCAAGGATAG AAGGTGCTAG TAATCCACTT ACTTCCGAAG AGGAATCGGT CCTAGCTGCA GAGGTTCAGG ATTTGGTTCA ATTACAGCGC CAGAGAGATG AGTTAGAGGC AAAGCTAGGG AGAACTCCAA GCGTTGAAGA ATGGGCAGAT TTTGTCGGAA GCTCGGTTTT CCGTCTGTAT GCAAGAATCG GAAGGGGCCG GGCAGCCAAG AGAAAAATGG TTTCTGCAAA TCTACCTCTT GTTCATTCAG TCGCTGGACG GTTTCTTGGG AAAGGACTTT CTCATACAGA ATTGTGCCAG GAAGGAGTTT TGGGTCTTTT AAAGAGCACG GAGAAGTATG ATACATCTTA TAAGACGAAA TTTTCTTCGT ACACCTTCTT ATGGATATGG GAGGGCATGT CTGCAGCTGT AAAGAAATTT CGTCACGTTT TACGTATTAG CAGGACTGTT TACGAAACCG CTTCATTGGT TCTTCGGCAC AAAGAGGAAT TCCAGTCTTC ACACGGGAGA GAACCTACTT TACAAGAGCT GGCTGATTTG TCACTCGTTG ATAAAGATAC GATTCGGAAT ACCATGAGAC TAGTCAGACC TGCAAAGTCA CTGGAACAAA TGGTCTCAAC TGTTGATGGG GAGTATGAGA AGCAGGTTGC AGATCCAGAC CGCAGCGTTC GTCCTTGGTT TCACTTGAGA GACGAAGACA TGAAGATGGA CATAAACAAC GCCCTTCATA GTCTTAGTTC TCGCGAGCAG GAAGTCCTAG AAATGCGATA TGGACTAGAT GGGAAGAGAC CTCTTTCCAG AGCAGAGGTT GCATCGTTGA TGAACTTGTC CTACGAGACC ATACGTCTGA CAGAGAAGAA AGCACTTGGA AAACTTCGAC ACATAGCAAA AGAAGATGGA CTACAAGCTT ATCTTTCGAG AACTTTCTGG GATCAGTAA |
Protein |
| >Mapoly0007s0071.1 MEAMVSVQFV KFASFSSAFW SSEPYTRGYV RAATRTRFPG TSLAVVQKAE SGRRTGSSSH VDVTESSERV NAQGSRKFDR VSAHAIDEDD STPVKGSSHW PRIEGASNPL TSEEESVLAA EVQDLVQLQR QRDELEAKLG RTPSVEEWAD FVGSSVFRLY ARIGRGRAAK RKMVSANLPL VHSVAGRFLG KGLSHTELCQ EGVLGLLKST EKYDTSYKTK FSSYTFLWIW EGMSAAVKKF RHVLRISRTV YETASLVLRH KEEFQSSHGR EPTLQELADL SLVDKDTIRN TMRLVRPAKS LEQMVSTVDG EYEKQVADPD RSVRPWFHLR DEDMKMDINN ALHSLSSREQ EVLEMRYGLD GKRPLSRAEV ASLMNLSYET IRLTEKKALG KLRHIAKEDG LQAYLSRTFW DQ |