GMAP: cDNA alignment to genome

Genome Mp JGI 3.1MpTak1 v5.1Mp subsp. polymorphaMp subsp. montivagansMpTak v6.1MpTak1 v5.1r2MpTak v6.1r2Mp Tak-1 v7.1Mp Tak-2 v7.1Mp Tak-1/2 std v7.1

Format PSL (BLAT) formatGFF3 gene formatGFF3 cDNA_match formatGFF3 EST_match formatsplice sites output (for GSNAP splicing file)introns output (for GSNAP splicing file)IIT FASTA exon map formatIIT FASTA range map formatcoords in table format(only show alignments)

Enter FASTA sequence(s) below:

Full documentation for GMAP is available here.
Reference: Thomas D. Wu and Colin K. Watanabe. GMAP: a genomic mapping and alignment program for mRNA and EST sequences. Bioinformatics 2005 21: 1859-1875.