Mp2g25720



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
SUPERFAMILY SSF55550 SH2 domain
CDD cd09918 SH2_Nterm_SPT6_like
Pfam PF14639 Holliday-junction resolvase-like of SPT6
Gene3D G3DSA:1.10.150.850 -
FunFam G3DSA:1.10.10.2740:FF:000002 Transcription elongation factor Spt6
Gene3D G3DSA:1.10.10.2740 -
SUPERFAMILY SSF47781 RuvA domain 2-like
Gene3D G3DSA:1.10.10.650 -
Pfam PF21710 Spt6, S1/OB domain
CDD cd00164 S1_like
SUPERFAMILY SSF50249 Nucleic acid-binding proteins
FunFam G3DSA:3.30.505.10:FF:000050 Transcription elongation factor spt6
Pfam PF14632 Acidic N-terminal SPT6
FunFam G3DSA:3.30.505.10:FF:000047 Transcription elongation factor spt6
Coils Coil Coil
SMART SM00732 rnase_8s
Pfam PF14633 SH2 domain
PANTHER PTHR10145 TRANSCRIPTION ELONGATION FACTOR SPT6
CDD cd09928 SH2_Cterm_SPT6_like
Gene3D G3DSA:3.30.505.10 SH2 domain
SUPERFAMILY SSF158832 Tex N-terminal region-like
Pfam PF14635 Helix-hairpin-helix motif
Pfam PF17674 HHH domain
Gene3D G3DSA:3.30.420.140 -
Pfam PF14641 Helix-turn-helix DNA-binding domain of SPT6
SUPERFAMILY SSF53098 Ribonuclease H-like
ProSiteProfiles PS50126 S1 domain profile.
Gene3D G3DSA:1.10.3500.10 -
SMART SM00316 S1_6
Gene3D G3DSA:2.40.50.140 -
KEGG K11292 transcription elongation factor SPT6
KOG KOG1856 Transcription elongation factor SPT6; [A]
KOG KOG2992 Nucleolar GTPase/ATPase p130; C-term missing; [Y]
KOG KOG4211 Splicing factor hnRNP-F and related RNA-binding proteins; N-term missing; [A]
MapolyID Mapoly0025s0106 -
GO GO:0034728 nucleosome organization
GO GO:0031491 nucleosome binding
GO GO:0008023 transcription elongation factor complex
GO GO:0006139 nucleobase-containing compound metabolic process
GO GO:0006368 transcription elongation by RNA polymerase II
GO GO:0003677 DNA binding
GO GO:0140673 transcription elongation-coupled chromatin remodeling
GO GO:0042393 histone binding
GO GO:0003676 nucleic acid binding

Nomenclature

Gene symbol Product Transcript ID Status
MpHC1 Chromatin related protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp2g25720.1 chr2:31577781..31589684 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.