Mp3g22530



Description

Annotation

Database ID Description
PANTHER PTHR11525 FARNESYL-PYROPHOSPHATE SYNTHETASE
ProSitePatterns PS00444 Polyprenyl synthases signature 2.
FunFam G3DSA:1.10.600.10:FF:000008 Farnesyl pyrophosphate synthase
ProSitePatterns PS00723 Polyprenyl synthases signature 1.
SFLD SFLDG01017 Polyprenyl Transferase Like
CDD cd00685 Trans_IPPS_HT
Pfam PF00348 Polyprenyl synthetase
SFLD SFLDS00005 Isoprenoid Synthase Type I
Gene3D G3DSA:1.10.600.10 Farnesyl Diphosphate Synthase
SUPERFAMILY SSF48576 Terpenoid synthases
KEGG K00787 farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
KOG KOG0711 Polyprenyl synthetase; [H]
MapolyID Mapoly0024s0031 -
GO GO:0008299 isoprenoid biosynthetic process
GO GO:0004337 geranyltranstransferase activity
GO GO:0004161 dimethylallyltranstransferase activity
GO GO:0045337 farnesyl diphosphate biosynthetic process
GO GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups
GO GO:0005737 cytoplasm

Nomenclature

Gene symbol Product Transcript ID Status
MpIDS1 Secondary metabolism enzyme, Terpene biosynthesis enzymes Provisional

Associated Literature (AI-based literature mining, Beta-version)

Secondary metabolism enzyme, Terpene biosynthesis enzymes (from nomenclature)

0 core 1 peripheral

Forestier ECF, Asprilla P, Bonter I, Romani F, Frangedakis E, Haseloff J. (2026) · Communications biology  research sequence background
Annotation corresponding to MpFPS, the farnesyl pyrophosphate synthase characterized in this study.

Transcript models

Transcript ID Location Sequences Extract region
Mp3g22530.1 chr3:25408272..25412387 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp3g22530.2 chr3:25408272..25412387 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp3g22530 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp3g22530 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.