Mp5g16020



Description

Annotation

Database ID Description
CDD cd12373 RRM_SRSF3_like
FunFam G3DSA:3.30.70.330:FF:000214 Serine/arginine-rich splicing factor 7
SMART SM00360 rrm1_1
SUPERFAMILY SSF57756 Retrovirus zinc finger-like domains
Gene3D G3DSA:4.10.60.10 -
SMART SM00343 c2hcfinal6
PANTHER PTHR23147 SERINE/ARGININE RICH SPLICING FACTOR
ProSiteProfiles PS50102 Eukaryotic RNA Recognition Motif (RRM) profile.
ProSiteProfiles PS50158 Zinc finger CCHC-type profile.
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF00076 RNA recognition motif
Gene3D G3DSA:3.30.70.330 -
SUPERFAMILY SSF54928 RNA-binding domain, RBD
Pfam PF00098 Zinc knuckle
KEGG K12896 serine/arginine-rich splicing factor 7
KOG KOG0107 Alternative splicing factor SRp20/9G8 (RRM superfamily); C-term missing; [A]
MapolyID Mapoly0071s0008 -
GO GO:0003723 RNA binding
GO GO:0000398 mRNA splicing, via spliceosome
GO GO:0008270 zinc ion binding
GO GO:0016607 nuclear speck
GO GO:0003676 nucleic acid binding

Nomenclature

Gene symbol Product Transcript ID Status
MpSR4 SR proteins, RNA-splicing Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp5g16020.1 chr5:20066121..20071687 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g16020.2 chr5:20067101..20071902 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.