Mp8g15710



Description

Annotation

Database ID Description
ProSiteProfiles PS50102 Eukaryotic RNA Recognition Motif (RRM) profile.
SMART SM00360 rrm1_1
MobiDBLite mobidb-lite consensus disorder prediction
SMART SM00361 rrm2_1
SUPERFAMILY SSF54928 RNA-binding domain, RBD
SMART SM00356 c3hfinal6
PANTHER PTHR12620 U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT
Pfam PF00076 RNA recognition motif
FunFam G3DSA:3.30.70.330:FF:000318 Zinc finger CCCH domain-containing protein 5
Coils Coil Coil
ProSiteProfiles PS50103 Zinc finger C3H1-type profile.
PRINTS PR01848 U2 auxiliary factor small subunit signature
Gene3D G3DSA:3.30.70.330 -
KEGG K24273 U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein
KOG KOG2202 U2 snRNP splicing factor, small subunit, and related proteins; [A]
KOG KOG4364 Chromatin assembly factor-I; N-term missing; C-term missing; [B]
KOG KOG0670 U4/U6-associated splicing factor PRP4; C-term missing; [A]
KOG KOG4715 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin; N-term missing; [B]
MapolyID Mapoly0079s0042 -
GO GO:0003723 RNA binding
GO GO:0046872 metal ion binding
GO GO:0000398 mRNA splicing, via spliceosome
GO GO:0030628 pre-mRNA 3'-splice site binding
GO GO:0089701 U2AF complex
GO GO:0003676 nucleic acid binding
GO GO:0005681 spliceosomal complex

Nomenclature

Gene symbol Product Transcript ID Status
MpC3H33 transcription factor, C3H Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp8g15710.1 chr8:20309223..20314119 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.