Mp6g11010



Description

Annotation

Database ID Description
CDD cd00012 NBD_sugar-kinase_HSP70_actin
FunFam G3DSA:3.30.420.40:FF:000058 Putative actin-related protein 5
FunFam G3DSA:3.30.420.40:FF:000291 Actin, alpha skeletal muscle
FunFam G3DSA:3.30.420.40:FF:000404 Major actin
FunFam G3DSA:3.90.640.10:FF:000001 Actin, muscle
Gene3D G3DSA:3.30.420.40 -
Gene3D G3DSA:3.90.640.10 Actin; Chain A, domain 4
KEGG K10355 actin, other eukaryote
KOG KOG0676 Actin and related proteins; [Z]
PANTHER PTHR11937 ACTIN
PRINTS PR00190 Actin signature
Pfam PF00022 Actin
ProSitePatterns PS00406 Actins signature 1.
ProSitePatterns PS00432 Actins signature 2.
ProSitePatterns PS01132 Actins and actin-related proteins signature.
SMART SM00268 actin_3
SUPERFAMILY SSF53067 Actin-like ATPase domain
MapolyID Mapoly0016s0139 -

Nomenclature

Gene symbol Product Transcript ID Status
MpACTIN7 Housekeeping Provisional

Associated Literature (AI-based literature mining)

Housekeeping (from nomenclature)

0 core 48 peripheral

Koebke, E., et al. (2022) · Frontiers in Plant Science  research citation tool
Actin reference gene used for qPCR normalization; primers described previously.
Mecchia, M.A., et al. (2022) · Development  research experimental tool
One of three reference genes used to normalize ddPCR transcript measurements. Gene ID not stated in the paper: assigned to Mp6g11010 (nomenclature symbol MpACTIN7), consistent with the MpACT7 ID stated in other papers of this corpus.
Guerrero, S., et al. (2024) · Journal of Integrative Plant Biology  research experimental tool
Proteomics study of sex-biased heat-drought stress responses in Marchantia; ACTIN7 (MpACT) used only as a normalization reference gene (no specific Mp gene characterized).
Carella, P., et al. (2018) · Proceedings of the National Academy of Sciences USA: doi/10.1073/pnas.1717900115  research sequence tool
Actin gene used as an internal reference for qRT-PCR normalization and as a M. polymorpha biomass marker for relative pathogen biomass quantification.
Schmid, M. W., et al. (2018) · Genome Biology  research experimental tool
Used as a reference gene for expression normalization, reported to be evenly expressed across M. polymorpha developmental stages.

Transcript models

Transcript ID Location Sequences Extract region
Mp6g11010.1 chr6:13963626..13966707 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp6g11010 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp6g11010 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.