Mp3g23400



Description

Annotation

Database ID Description
PRINTS PR00315 GTP-binding elongation factor signature
ProSiteProfiles PS51722 Translational (tr)-type guanine nucleotide-binding (G) domain profile.
Pfam PF00009 Elongation factor Tu GTP binding domain
Hamap MF_00118_A Elongation factor Tu [tuf].
FunFam G3DSA:3.40.50.300:FF:000255 Elongation factor 1-alpha
PANTHER PTHR23115 TRANSLATION FACTOR
CDD cd01883 EF1_alpha
ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature.
FunFam G3DSA:2.40.30.10:FF:000003 Elongation factor 1-alpha
Pfam PF03143 Elongation factor Tu C-terminal domain
NCBIfam TIGR00483 translation elongation factor EF-1 subunit alpha
CDD cd03705 EF1_alpha_III
Gene3D G3DSA:3.40.50.300 -
SUPERFAMILY SSF50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
Gene3D G3DSA:2.40.30.10 Translation factors
CDD cd03693 EF1_alpha_II
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
FunFam G3DSA:2.40.30.10:FF:000005 Elongation factor 1-alpha
SUPERFAMILY SSF50447 Translation proteins
Pfam PF03144 Elongation factor Tu domain 2
KEGG K03231 elongation factor 1-alpha
KOG KOG0052 Translation elongation factor EF-1 alpha/Tu; [J]
MapolyID Mapoly0024s0116 -
GO GO:0003924 GTPase activity
GO GO:0003746 translation elongation factor activity
GO GO:0006412 translation
GO GO:0005525 GTP binding
GO GO:0006414 translational elongation

Nomenclature

Gene symbol Product Transcript ID Status
MpEF1 Housekeeping Provisional

Associated Literature (AI-based literature mining, Beta-version)

Endogenous elongation factor 1-alpha promoter characterized as a constitutive driver for Marchantia overexpression/silencing; the proMpEF1α::GUS reporter showed strong meristematic and broadly ubiquitous expression, outperforming CaMV35S. Whole-mount in situ hybridization of endogenous MpEF1α mRNA matched the GUS pattern (meristematic zones of gemmae; egg cells, neck and venter cells of young archegonia).

1 core 113 peripheral

Althoff F, Kopischke S, Zobell O, Ide K, Ishizaki K, Kohchi T, Zachgo S. (2014) · Transgenic Res  research experimental subject
Endogenous elongation factor 1-alpha promoter characterized as a constitutive driver for Marchantia overexpression/silencing; the proMpEF1α::GUS reporter showed strong meristematic and broadly ubiquitous expression, outperforming CaMV35S. Whole-mount in situ hybridization of endogenous MpEF1α mRNA matched the GUS pattern (meristematic zones of gemmae; egg cells, neck and venter cells of young archegonia).
Yamamoto, C., et al. (2024) · Proceeding of the National Academy of Sciences USA  research citation tool
Elongation factor used as an internal reference for normalizing transcript levels in expression heat maps.
Bowman, J. L., et al. (2016a) · Plant and Cell Physiology  review citation tool
proMpEF1 promoter example
Salminen, T. A., et al. (2018) · Plants  review citation tool
EF1α promoter
Kato H, Ishizaki K, Kouno M, Shirakawa M, Bowman JL, Nishihama R, Kohchi T. (2015) · PLoS Genet  research experimental tool
Used as a molecular tool: the constitutive proMpEF1alpha promoter drove the modified auxin-signaling constructs (e.g. proMpEF1α:MpIAA mDII) in transgenic Marchantia, rather than being a subject of study here.

Transcript models

Transcript ID Location Sequences Extract region
Mp3g23400.1 chr3:26594189..26596642 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp3g23400.2 chr3:26594189..26596363 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp3g23400 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp3g23400 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.